Dear All,
I have a look in a DNA simulation tutorial in Amber homepage. In step 3
(moving DNA), DNA was minimized 6 rounds by decreasing force constant from
25 to 0 kcal/(mol.A**2). As my understanding, this minimization is only bond
length minimization, right? Are bond angle and dihedral angle minimized?
Thank you very much in advance for your kindness response.
Hungie
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Received on Tue May 06 2003 - 14:53:01 PDT
