Hi Gemma
One way to do this would be to calculate the transformation matrix used
to reorient the protein (vmd will do this, search through the manual for
"set transformation_matrix". You can then apply the same transformation
matrix to the original orientation within Leap, using the transform
command.
Hope this helps,
Samantha
On Mon, 2003-03-03 at 13:54, Gemma Kinsella wrote:
> Hi all,
>
> I've come across what should be a trivial problem while trying to set up a
> membranne protein simulation in a bilayer. I wish to reorientate the
> position of my starting protein so it will lie straighter in the bilayer
> during set-up. (i.e. loops at top and bottom)
>
> While I have no problem doing so visually, (weblab viewer, vmd, sybyl) I have
> been unable to find a piece of software that will allow me to save the
> proteins new coordinates to be introduced to leap and was hoping someone
> could point me in the right direction.
>
> Many thanks,
>
> Gemma
>
>
Received on Mon Mar 03 2003 - 14:53:01 PST
