Hi,
have a look at the program ANAL of AMBER, in particular section 6 of the
input description in the manual.
Best regards
Holger
> I have a naive question.
> When I have got the trajectory, which program can I use to get the local
> energy (e.g. BOND,
> Torsion) for a short peptide(say, 5 residues) instead of the whole system?
>
> Sorry if this question has been asked and answered before.
>
> Thanks,
> Sichun
--
+++++++++++++++++++++++++++++++++++++++++++++
Dr. Holger Gohlke
Dept. of Molecular Biology, TPC15
The Scripps Research Institute
10550 N. Torrey Pines Rd.
La Jolla CA 92037 USA
phone: +1-858-784-9788
fax: +1-858-784-8896
email: gohlke.scripps.edu
+++++++++++++++++++++++++++++++++++++++++++++
Received on Wed Feb 19 2003 - 23:53:00 PST
