From: Yongmei Wang <>
Date: Tue 18 Feb 2003 18:14:01 -0500

Hi, I am new to amber and have several questions regarding mm_pbsa.

(1) Has anyone worked out that works with UHBD software instead
of Delphi? I don't have a copy of Delphi, only UHBD.

(2) To calculate the Binding energy between a ligand and receptor, do I
always have to generate snapshot first (01GenerateSnapshot) and then
calcualte the binding (06Binding_mmpbsa)?

(3) When I set DC=1, the meaning of symbols in the output statistics file is
not clear. Is there any explanation out there about the output data when


Yongmei Wang
Associate Professor
Dept of Chemistry
North Carolina A&T State University
Greensboro, NC 27411
Tel: 336-334-7601 (ext 2021)
Fax: 336-334-7124
Received on Tue Feb 18 2003 - 15:14:01 PST
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