question about ligand

From: Lishan Yao <>
Date: Fri 31 Jan 2003 17:43:39 -0500 (EST)

   I try to run MD for a protein complexed with ligand. I prepared prep file
for ligand. But the problem is when leap reads the pdb file of protein ligand
complex, it always complains about the atom names of the ligand. I try to
change these atom names to the names in prep file manually. But I don't know
whether this is the right way to fix this problem?

Lishan Yao
Chemistry department
MSU, East Lansing
MI, 48823
Received on Fri Jan 31 2003 - 14:43:39 PST
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