Hi,
You can use trnsform command in rdparm to get all the coordinates in
the central box,it needs parmtop & mdcrd files.
On Mon, 27 Jan 2003, Xiang, Tian-Xiang wrote:
> Dear Sir:
>
> I am trying to prepare an image of my simulated lipid bilayer structure obtained from
> sander/amber using a graphics program like VMD, but some molecules are always
> stretched out of the central box. This can not be solved by using "image" command in ptraj. The one way I can think of is that somehow one can get the image of the central box along with the neighboring boxes. Anyone has ideas how to do this or a better way?
>
> Thanks
>
>
> T.-X. Xiang
>
Received on Mon Jan 27 2003 - 17:51:35 PST
