ad> distances
I'd better switch to group specification for DISTANCE measurements, as you
used. What didn't work for me was;
DIST OD1 25 H20
199;
ATNAME1 RESNUM1 ATNAME2 RESNUM2
> Ad H-bonds) What does it mean when I get different atom order in an H-bond
> like H - O........O ?
> +++ Sorry I do not understand this question. :-( or what you said mean
> H-O...H H-bond which seems stupid!? Are you using amber7 or someother
> version?
The thing is, the majority is written out as they should be, i.e.
donor-Hatom.......acceptor.
Here, the first two atoms are reversed. As well, I didn't get the H-O.....H
notation. Yes, I'm using A7.
Regards,
Martin Lepsik
Received on Tue Jan 21 2003 - 10:07:18 PST
