Amber tutorial crown-ether

From: Dvira Segal <>
Date: Tue 21 Jan 2003 16:06:55 +0200

I am trying to run Amber tutorial 'crown-ether' and unfortunately
encounter many problems. I understand that it was written for older
versions, but still I have some basic non-version related problems...

1) For example, the gibbs part ("Running the gibbs program" ) runs

gibbs -O \
                -i \
                -p ../setup/ \
                -c ../dynamics/md0.rst \
                -o gib_na_k.out \
                -r gib_na_k.rst

I dont see above where the coordinate file md0.rst was created.

2) Same problem with the dynamics part which needs the files
and crowni.crd - What are these files? I dont see them in the setup

3) Is there a newer version of this tutorial (Im using amber7)

4) Thank you for your previous help, Im advancing...

 Dvira Segal
 Dvira Segal
 School of Chemistry, Tel Aviv University
 Tel Aviv, 69978 ISRAEL

 Phone: 972-3-640 7634 Fax: 972-3-642 3765
Received on Tue Jan 21 2003 - 06:06:55 PST
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