I am trying to run Amber tutorial 'crown-ether' and unfortunately
encounter many problems. I understand that it was written for older
versions, but still I have some basic non-version related problems...
1) For example, the gibbs part ("Running the gibbs program" ) runs
gibbs -O \
-i gib10.in \
-p ../setup/crown_na_k.top \
-c ../dynamics/md0.rst \
-o gib_na_k.out \
-r gib_na_k.rst
I dont see above where the coordinate file md0.rst was created.
2) Same problem with the dynamics part which needs the files crowni.top
and crowni.crd - What are these files? I dont see them in the setup
section.
3) Is there a newer version of this tutorial (Im using amber7)
4) Thank you for your previous help, Im advancing...
Dvira Segal
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Dvira Segal
School of Chemistry, Tel Aviv University
Tel Aviv, 69978 ISRAEL
Phone: 972-3-640 7634 Fax: 972-3-642 3765
email: dvira_at_post.tau.ac.il
http://femto.tau.ac.il/~dvira
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Received on Tue Jan 21 2003 - 06:06:55 PST
