Predefined Water_cap with xleap

From: Jose Ramon Blas <>
Date: Wed 8 Jan 2003 10:42:16 -0800 (PST)

I have coordinates for a protein surrounded by counterions and a SOLVENT
drop (solvent is heterogeneous --not only one type of residue--).

I load this in xleap (loadpdb), but I want that the generated unit when
saved as a topology, clearly distingishes between SOLUTE/SOLVENT parts. Is
this possible with xleap?? Because if, when running gibbs, I make use of
the ivcap & natcap & fcap keywords in order to apply the common
cap-restraint , things do not work properly and solvent evaporates!!

Thanks for any help,

Jose Ramon

Jose R. Blas
Molecular Modelling & Bioinformatics e-mail:
IRBB, Parc Cientific de Barcelona phone: + 34 93 403 71 55
C/Josep Samitier 1-5,
08028 Barcelona
Received on Wed Jan 08 2003 - 10:42:16 PST
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