averaging with ptraj and carnal

From: Vlad Cojocaru <Vlad.Cojocaru_at_mpi-bpc.mpg.de>
Date: Fri 08 Nov 2002 13:31:03 +0100

Dear Amber users,
   Thanks a lot for clarifying the average runningaverage difference.
Now I have another question:
   The results of averaging in ptraj and carnal are very different for
the same trajectory. While in carnal I obtain a structure that looks
very strange in ptraj I obtain a "good looking structure". Where can
this be coming from? I have to add that I use vmd for visualization.
Thanks a lot,

Vlad Cojocaru 
Max Planck Institute for Biophysical Chemistry 
Department: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1389 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
home tel: ++49-551-9963204  
Received on Fri Nov 08 2002 - 04:31:03 PST
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