Hi,
I am using rdparm to look at a parmtop file.
For example I am looking at the atoms in residue number 2.
RDPARM MENU: atoms :2
Mask [:2] represents 12 atoms
Number: Atom Charge Mass ( Residue ) Type Tree
13: N -0.51630 14.0 ( 2:ASP ) N M
14: H 0.29360 1.0 ( 2:ASP ) H E
15: CA 0.03810 12.0 ( 2:ASP ) CT M
16: HA 0.08800 1.0 ( 2:ASP ) H1 E
17: CB -0.03030 12.0 ( 2:ASP ) CT 3
18: HB2 -0.01220 1.0 ( 2:ASP ) HC E
19: HB3 -0.01220 1.0 ( 2:ASP ) HC E
20: CG 0.79940 12.0 ( 2:ASP ) C B
21: OD1 -0.80140 16.0 ( 2:ASP ) O2 E
22: OD2 -0.80140 16.0 ( 2:ASP ) O2 E
23: C 0.53660 12.0 ( 2:ASP ) C M
24: O -0.58190 16.0 ( 2:ASP ) O E
My question is what is the meaning of TREE and of the letters/numbers
underneath? In other cases the TREE info is BLA, what does that mean as
well? Is there some info on the web that I missed? (I looked in the e-mail
archive and could not find anything related).
Thank you,
Ioana
Received on Tue Oct 08 2002 - 10:33:41 PDT
