Hi,
Thanks for your reply, you are right the required file is not under
/usr/include/ but under another path, i.e. /opt/mpt/mpt/usr/include/
This is an origin cluster on which I am trying to compile amber and try
some runs so I do not have more than user privileges.
Do you know a way around this? Could I make in a simple way the compiler
to look for this file into another directory?
Thanks,
Ioana
On Thu, 3 Oct 2002, David A. Case wrote:
> On Thu, Oct 03, 2002, Ioana Cozmuta wrote:
> >
> > I am trying to compile Amber7 on an SGI machine/cluster. If I use the
> > Machine.sgi_nopar the software compiles without errors.
> > However if I try to compile it for parallel use (Machine.sgi_mpi) I get
> > the following error message:
> >
> > mv addles ../../exe
> > cd sander; make install
> > ../Compile L3 -P -DDPREC ew_force.f cat ew_force.f | /lib/cpp -P
> > -DDPREC -DIRIS -DMEM_ALLOC -DHAS_FTN_ERFC -DMPI -DRLE -DROWAT -DBLAS1
> > -DSGIFFT -DTFP -DCACHE_BLOCKSIZE=2500 > _ew_force_.f
> > cpp: error 55: Can't find include file mpif.h
> > cpp: error 851: Can't find include file mpif.h
> > cpp: error 1105: Can't find include file mpif.h
> > *** Error code 1 (bu21)
> > *** Error code 1 (bu21)
> >
> >
> > I looked into the src/Machines/mpi/ directory and the mpif.h file
> > is there. So unless the error above is not related to the location of this
> > file... I do not know what is going wrong.
> >
>
> The $AMBERHOME/src/Machines/mpi/mpif.h file is irrelevant (and that whole
> directory really doesn't need to be there anymore...)
>
> The system is really looking for /usr/include/mpif.h. My guess is that it
> is not there, because you don't have MPI installed on your machine. You
> need to either get MPI from SGI, or install MPICH and use Machine.sgi_mpich.
>
> ..dac
>
> --
>
> ==================================================================
> David A. Case | e-mail: case_at_scripps.edu
> Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896
> The Scripps Research Institute | phone: +1-858-784-9768
> 10550 N. Torrey Pines Rd. | home page:
> La Jolla CA 92037 USA | http://www.scripps.edu/case
> ==================================================================
>
>
Received on Thu Oct 03 2002 - 20:09:02 PDT
