Dear Amber users,
Does anybody know what is wrong with the output from a simple CARNAL
averaging. The pdb file of the average structure can not be visualized
with any software and I also can not use it afterwards for calculating
the rmsd of each frame to the average structure. The script is below:
FILES_IN
PARM p1 ../rna_ion_wat.top;
STREAM s1 ../00.crd.gz ../01.crd.gz ../02.crd.gz ../03.crd.gz
../04.crd.gz;
FILES_OUT
COORD crd AVG.pdb PDB;
DECLARE
OUTPUT
COORD crd s1 AVERAGE;
END
--
Vlad Cojocaru
Max Planck Institut for Biophysical Chemistry
Deparment: 060
Am Fassberg 11, 37077 Goettingen, Germany
tel: ++49-551-201.1389
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
Received on Mon Sep 02 2002 - 04:43:33 PDT
