When using the image command of ptraj, what is the most common or right way to
image: bymol (which is the default) or byatom, byres ... I have tried using
bymol imaging and the box still looked misshaped, but when I used the byatom
or byres imaging, the box seems to look better. What is the difference between
the three choices and when should each one be used? Also if I have a
rectangular parallelopiped, should I use the familiar command?
Thanks a lot for any help.
Sophia Kondratova
Received on Thu Aug 29 2002 - 10:46:01 PDT
