Re: problems compiling Amber 7

From: David A. Case <>
Date: Thu 27 Jun 2002 11:27:09 -0700

On Thu, Jun 27, 2002, ramon kleber da rocha wrote:
> We have just got amber 7, and we are now trying to compile it on a
> SP2 machine. The SP2 manager got the following error when he try to
> compile amber 7 using the Machine.sp2 provided.
> Could you please, help us with it?

Be sure to check the "using Amber on IBM machines" link at the Amber Web
site. It has updated MACHINE files and patches for sp2 and other IBM

> ld: 0711-317 ERROR: Undefined symbol: .startup_groups
> ld: 0711-317 ERROR: Undefined symbol: .setpar

This is pretty weird: setpar is in set.f; startup_groups is in ew_setup.f.
Do you have (non-empty) set.o and ew_setup.o files? Try doing a make clean,
followed by just "make sander" , to see if that works. Since the errors
seem to be in compiling sander.LES, you *could* skip that step if you
don't need to run LES....

Carlos Sosa (who runs the IBM site referred to above) may also have some

..good luck...dac

David A. Case                     |  e-mail:
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
La Jolla CA 92037  USA            |
Received on Thu Jun 27 2002 - 11:27:09 PDT
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