Re: how to create a bond (fwd)

From: amber mail account <>
Date: Thu 20 Dec 2001 12:37:11 -0800 (PST)

---------- Forwarded message ----------
Date: Thu, 20 Dec 2001 11:45:21 -0800 (PST)
From: Bill Ross <>
Subject: Re: how to create a bond

        hi, I am using xleap and want to create a bond between two atoms,
        I "draw" it, but it does not get saved.

How do you know it does not get saved?

        What is the simplest way to do this?
        I tried in xleap
        bond C1 N1
        but I get the error message
        bond: Argument #1 is of type String and it must be of type: [atom]
See the documentation - 'bond' requires unit.residue#.atomname.

        I also tried writing it explicitly in the pdb file:
        CONN 580 751
The pdb convention is CONECT.

Bill Ross
Received on Thu Dec 20 2001 - 12:37:11 PST
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