This affect the verion of Parm99 posted on the
Amber web page and the parm99.datfile (possibly)
distributed with Amber5.
Make the following substitions
536,538c536,538
< C -CT-N -C 1 0.50 180.0 -4. phi,psi,parm94
< C -CT-N -C 1 0.15 180.0 -3. phi,psi,parm94
< C -CT-N -C 1 0.53 0.0 1. phi,psi,parm94
---
> CT-CT-N -C 1 0.50 180.0 -4. phi,psi,parm94
> CT-CT-N -C 1 0.15 180.0 -3. phi,psi,parm94
> CT-CT-N -C 1 0.53 0.0 1. phi,psi,parm94
( the "<" lines are to be removed and replaced with ">" lines)
jim
On Fri, 26 Jan 2001, JUNMEI Wang wrote:
> Hi, Warren,
> I checked the origin files and I found that it is a type error of
> parm99.dat in the web. It should be CT-CT-N-C, not C-CT-N-C. My old
> versions of parm99.dat are all correct. This error was introduced recently
> during the procedure of reorgnizing/revising the file.
> The simulations on the paper are all fine.
> As I know, the parm/leap program can wisely ignore redundant parameters
> (the priority order is as the following: specific parameter in frcmod >
> general parameter in frcmod >specific parameter in parm9x >general
> parameter in parm9x).
> I am sorry for this serious problem.
>
> Junmei
>
>
> -----------------------------------------
> Junmei Wang, Ph.D.
> Department of Pharmaceutical Chemistry,
> University of California San Francisco,
> San Francisco, CA 94143-0446
> Phone: (415)476-7900 (lab)
> (415)681-7818 (home)
> Fax: (415)502-1411
> Email: junmei_at_cgl.ucsf.edu
> -----------------------------------------
>
>
>
----------------------------------------------------------------------------
James W. Caldwell (voice) 415-476-8603
Department of Pharmaceutical Chemistry (fax) 415-502-1411
Mail Stop 0446 (email) caldwell_at_heimdal.ucsf.edu
513 Parnassus Avenue (video) farbauti.compchem.ucsf.edu
University of California (netmeeting)
San Francisco, CA 94143-0446
----------------------------------------------------------------------------
Received on Fri Jan 26 2001 - 12:18:51 PST