Hello all,
I am about ready to pull my hair out with this nucgen input file. Past
experience with sander tells me that I have a simple formating problem, but
I cannot locate the problem. the input and output files are below.
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NUC 1
D
C5 G C T A T A A A A G G G C3
NUC 2
D
G5 C C C T T T T A T A G C G3
END
$ABDNA
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------------------------------------------------------------------
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Amber 5 NUCGEN UCSF 1997
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INPUT MOLECULES INFORMATION
NUC 1
MOLECULE 1 CONTAINS 14 RESIDUES:
C5 G C T A T A A A A G G
G C3
NUC 2
MOLECULE 2 CONTAINS 14 RESIDUES:
G5 C C C T T T T A T A G
C G3
Unknown residue: G
Unknown residue: C
Unknown residue: T
Unknown residue: A
Unknown residue: T
Unknown residue: A
Unknown residue: A
Unknown residue: A
Unknown residue: A
Unknown residue: G
Unknown residue: G
Unknown residue: G
Unknown residue: C3
Unknown residue: C
Unknown residue: C
Unknown residue: C
Unknown residue: T
Unknown residue: T
Unknown residue: T
Unknown residue: T
Unknown residue: A
Unknown residue: T
Unknown residue: A
Unknown residue: G
Unknown residue: C
Unknown residue: G3
RESIDUE NAMES ARE NOT UNIFORMLY OLD OR 1994 NUCLEIC ACIDS
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Thanks for your help,
Troy Bothwell
Graduate Student
University of Nebraska Lincoln
Received on Mon Jan 08 2001 - 12:53:52 PST
