There is an article in J.Mol.Biol. dealing with calculating elastic
properties of DNA from MD trajectories:
Lankas F, Sponer J, Hobza P, Langowski J: Sequence-dependent Elastic
Properties of DNA. J. Mol. Biol. (2000) 299, 695-709
Good luck
Filip
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Dr. Filip Lankas
J.Heyrovsky Institute of Physical Chemistry
Czech Academy of Sciences
Dolejskova 3, 18200 Praha 8, Czech Republic
Phone +420-2-66053607 Fax +420-2-8582307
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On Tue, 12 Dec 2000, Jithesh P.V wrote:
>
> Hi,
>
> We are doing MD studies of DNA with water and ions using AMBER to study
> the flexibility. Could anyone suggest the best method of analysis of MD
> trajectories to represent the flexibility of duplex DNA.
>
> Thanks
> Jithesh
>
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Jithesh P.V.
> Bioinformatics Applications
> National PARAM Supercomputing Facility
> Centre for Development of Advanced Computing
> Pune University Campus, Pune, India - 411007.
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
>
Received on Tue Dec 12 2000 - 03:04:45 PST
