Amber users:
We are using the sander_classic module of AMBER6 to equilibrate and run production
dynamics on a sovated, ionized DNA. I was using control files previously used
successfully with AMBER5. Everything seemed normal during the equilibration process
except the trajectory files were empty. NTWXM was set to 999999, it is my understanding
that this would keep NTWX active for 999999 steps. Disabling NTWXM (setting it to zero),
gave me trajectory files but I don't understand why settin NTWXM to 999999 deactivated
NTWX. Is this an AMBER6 thing?
Pete Gannett
West Virginia University
Received on Wed Jun 14 2000 - 19:39:18 PDT
