perturbed topology file

From: Terreux Raphael <terreux_at_taloa.unice.fr>
Date: Wed 22 Mar 2000 16:26:07 -0800

Dear amber users,

I am trying to measurated the free energy variation during a interaction
process of two RNA loop. To use Gibbs module, i must have a perturbed
topology files, but in my cases there are no atoms mutation. I read in
the manual (Amber 5.0 vol 1 p 225) that is possible to create a pertubed
topology files with no perturbed atoms. It is not very well define how
to do this the job. May someone help me ? thank in advance for your help

Regards

Raphael terreux 


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TERREUX Raphael
LARTIC
Universite de Nice-Sophia Antipolis,
Parc Valrose, F 06108, Cedex 2,
NICE, FRANCE
TEL : +33 (0)4 92 07 61 26
FAX : +33 (0)4 92 07 61 25
e-mail : terreux_at_chiminfo.unice.fr
         terreux_at_unice.fr
web    : http://chiminfo11.unice.fr/~terreux/index.htm
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Received on Wed Mar 22 2000 - 16:26:07 PST
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